GenerateFA service in wmEDI

Is it possible to get an output from generateFA service or any other EDI service where the bad Transaction sets in the input “edidata” are suppressed.
For example if a X12 file has 3 Transaction sets ST-1…SE-1, ST-2…SE-2 and ST-3…SE-3 out of which ST-2…SE-2 has some invalid elements, is it possible to suppress ST-2…SE-2 in the output ?