What configuration management system/repository to people use with webMethods. We are currently using CVS but have a big list of reasons why webMethods isn’t CVS friendly (mainly due to the way webMethods save source and class files)
Any suggestions?
we have been using PVCS from Merant for more than 2 years without much problems.
Since webMethods as such doesnt support any configuration management tool, any 3rd party software you use is bound to have problems one way or other. You will have to be accomodating in nature 
Please read Ch 3 "Using Source Control with the Integration Server’ of “Cooperative Development Guide” provided with IS 4.6
This will help you understand limitations of any approach you will follow. (Package level or Component level)
Regards,
Saurabh Maheshwari
(sm195@lucent.com)